Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123315..2123483 | Replicon | chromosome |
| Accession | NZ_CP056682 | ||
| Organism | Klebsiella grimontii strain RHBSTW-00634 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123373..2123476 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123315..2123483 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV252_RS10045 | 2118442..2120502 | + | 2061 | WP_098065722.1 | oligopeptidase B | - |
| HV252_RS10050 | 2120509..2121168 | - | 660 | WP_181511779.1 | exodeoxyribonuclease X | - |
| HV252_RS10055 | 2121247..2121477 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV252_RS10060 | 2121613..2121987 | + | 375 | WP_181511780.1 | CopC domain-containing protein YobA | - |
| HV252_RS10065 | 2121992..2122861 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| HV252_RS10070 | 2122878..2123216 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2123315..2123483 | - | 169 | - | - | Antitoxin |
| - | 2123373..2123476 | + | 104 | - | - | Toxin |
| HV252_RS10075 | 2123601..2124560 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| HV252_RS10080 | 2124575..2126905 | - | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| HV252_RS10085 | 2126908..2127672 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| HV252_RS10090 | 2127691..2128209 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163872 NZ_CP056682:2123373-2123476 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT163872 NZ_CP056682:c2123483-2123315 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
