Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061570..2061771 | Replicon | chromosome |
| Accession | NZ_CP056663 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00668 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061663..2061766 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061570..2061771 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV259_RS09825 | 2058119..2058781 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| HV259_RS09830 | 2058806..2059444 | - | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV259_RS09835 | 2059556..2059786 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV259_RS09840 | 2059924..2060295 | + | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV259_RS09845 | 2060297..2061166 | + | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV259_RS09850 | 2061183..2061521 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 2061570..2061771 | - | 202 | - | - | Antitoxin |
| HV259_RS09855 | 2061647..2061844 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2061663..2061766 | + | 104 | - | - | Toxin |
| HV259_RS09860 | 2061890..2062870 | - | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV259_RS09865 | 2063038..2063682 | + | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV259_RS09870 | 2063717..2063956 | - | 240 | WP_006811010.1 | YebV family protein | - |
| HV259_RS09875 | 2064061..2065524 | - | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163843 NZ_CP056663:2061663-2061766 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT163843 NZ_CP056663:c2061771-2061570 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
