Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2186198..2186340 | Replicon | chromosome |
| Accession | NZ_CP056647 | ||
| Organism | Citrobacter sp. RHBSTW-00229 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2186233..2186336 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2186198..2186340 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV135_RS10430 | 2182645..2183307 | - | 663 | WP_181220539.1 | exodeoxyribonuclease X | - |
| HV135_RS10435 | 2183331..2183987 | - | 657 | WP_047415371.1 | carbon-nitrogen hydrolase family protein | - |
| HV135_RS10440 | 2184094..2184324 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV135_RS10445 | 2184468..2184842 | + | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| HV135_RS10450 | 2184846..2185718 | + | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HV135_RS10455 | 2185739..2186077 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2186198..2186340 | - | 143 | - | - | Antitoxin |
| - | 2186233..2186336 | + | 104 | - | - | Toxin |
| HV135_RS10460 | 2186414..2187475 | - | 1062 | WP_181632430.1 | tyrosine-type recombinase/integrase | - |
| HV135_RS10465 | 2187472..2187960 | - | 489 | Protein_2041 | IS3 family transposase | - |
| HV135_RS10470 | 2188041..2189549 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| HV135_RS10475 | 2190222..2190910 | - | 689 | Protein_2043 | IS3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2109685..2233224 | 123539 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163826 NZ_CP056647:2186233-2186336 [Citrobacter sp. RHBSTW-00229]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT163826 NZ_CP056647:c2186340-2186198 [Citrobacter sp. RHBSTW-00229]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
