Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955257..1955490 | Replicon | chromosome |
| Accession | NZ_CP056644 | ||
| Organism | Citrobacter freundii strain RHBSTW-00267 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955383..1955486 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955257..1955490 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV139_RS09195 | 1951803..1952465 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HV139_RS09200 | 1952489..1953145 | - | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| HV139_RS09205 | 1953252..1953476 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV139_RS09210 | 1953621..1953995 | + | 375 | WP_135911868.1 | CopC domain-containing protein YobA | - |
| HV139_RS09215 | 1954000..1954872 | + | 873 | WP_135911869.1 | copper homeostasis membrane protein CopD | - |
| HV139_RS09220 | 1954889..1955227 | + | 339 | WP_115258191.1 | YebY family protein | - |
| - | 1955257..1955490 | - | 234 | - | - | Antitoxin |
| - | 1955383..1955486 | + | 104 | - | - | Toxin |
| HV139_RS09225 | 1955564..1956649 | - | 1086 | WP_181217818.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV139_RS09230 | 1956618..1956890 | - | 273 | WP_032170291.1 | excisionase | - |
| HV139_RS09235 | 1956954..1957196 | - | 243 | WP_001237028.1 | DUF4060 family protein | - |
| HV139_RS09240 | 1957183..1957836 | - | 654 | WP_181630975.1 | hypothetical protein | - |
| HV139_RS09245 | 1957895..1959007 | - | 1113 | WP_181630814.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163803 NZ_CP056644:1955383-1955486 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 234 bp
>AT163803 NZ_CP056644:c1955490-1955257 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGATGATTGTCACTCGCTATAACGCAAAAACCGCAAGTTCTTCAGCCAGAACGTTGCGGTTTTTT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGATGATTGTCACTCGCTATAACGCAAAAACCGCAAGTTCTTCAGCCAGAACGTTGCGGTTTTTT
