Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2036214..2036357 | Replicon | chromosome |
| Accession | NZ_CP056622 | ||
| Organism | Citrobacter freundii strain RHBSTW-00310 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2036249..2036352 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2036214..2036357 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV151_RS09620 | 2032661..2033323 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| HV151_RS09625 | 2033347..2034003 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
| HV151_RS09630 | 2034110..2034340 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV151_RS09635 | 2034484..2034858 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV151_RS09640 | 2034862..2035734 | + | 873 | WP_048232225.1 | copper homeostasis membrane protein CopD | - |
| HV151_RS09645 | 2035755..2036093 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2036214..2036357 | - | 144 | - | - | Antitoxin |
| - | 2036249..2036352 | + | 104 | - | - | Toxin |
| HV151_RS09650 | 2036506..2037147 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| HV151_RS09655 | 2037148..2037339 | - | 192 | WP_003841978.1 | YebW family protein | - |
| HV151_RS09660 | 2037442..2037678 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV151_RS09665 | 2037779..2039200 | - | 1422 | WP_071698462.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163784 NZ_CP056622:2036249-2036352 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163784 NZ_CP056622:c2036357-2036214 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
