Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950720..1950955 | Replicon | chromosome |
| Accession | NZ_CP056597 | ||
| Organism | Citrobacter freundii strain RHBSTW-00334 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950846..1950949 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950720..1950955 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV164_RS09060 | 1947266..1947928 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HV164_RS09065 | 1947952..1948608 | - | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| HV164_RS09070 | 1948715..1948939 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV164_RS09075 | 1949084..1949458 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HV164_RS09080 | 1949463..1950335 | + | 873 | WP_135911869.1 | copper homeostasis membrane protein CopD | - |
| HV164_RS09085 | 1950352..1950690 | + | 339 | WP_146716933.1 | YebY family protein | - |
| - | 1950720..1950955 | - | 236 | - | - | Antitoxin |
| - | 1950846..1950949 | + | 104 | - | - | Toxin |
| HV164_RS09090 | 1951104..1951745 | + | 642 | WP_181217787.1 | protein-serine/threonine phosphatase | - |
| HV164_RS09095 | 1951746..1951937 | - | 192 | WP_045444034.1 | YebW family protein | - |
| HV164_RS09100 | 1952040..1952276 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HV164_RS09105 | 1952377..1953798 | - | 1422 | WP_181540757.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163764 NZ_CP056597:1950846-1950949 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT163764 NZ_CP056597:c1950955-1950720 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
