Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2109522..2109665 | Replicon | chromosome |
| Accession | NZ_CP056595 | ||
| Organism | Citrobacter freundii strain RHBSTW-00342 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109557..2109660 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2109522..2109665 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV167_RS10040 | 2105969..2106631 | - | 663 | WP_071696728.1 | exodeoxyribonuclease X | - |
| HV167_RS10045 | 2106655..2107311 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| HV167_RS10050 | 2107418..2107648 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV167_RS10055 | 2107792..2108166 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV167_RS10060 | 2108170..2109042 | + | 873 | WP_071696727.1 | copper homeostasis membrane protein CopD | - |
| HV167_RS10065 | 2109063..2109401 | + | 339 | WP_071696726.1 | YebY family protein | - |
| - | 2109522..2109665 | - | 144 | - | - | Antitoxin |
| - | 2109557..2109660 | + | 104 | - | - | Toxin |
| HV167_RS10070 | 2109814..2110455 | + | 642 | WP_071697354.1 | protein-serine/threonine phosphatase | - |
| HV167_RS10075 | 2110456..2110647 | - | 192 | WP_003034941.1 | YebW family protein | - |
| HV167_RS10080 | 2110750..2110986 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV167_RS10085 | 2111087..2112508 | - | 1422 | WP_071697355.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163745 NZ_CP056595:2109557-2109660 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163745 NZ_CP056595:c2109665-2109522 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
