Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2856443..2856586 | Replicon | chromosome |
| Accession | NZ_CP056592 | ||
| Organism | Citrobacter freundii strain RHBSTW-00350 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2856448..2856551 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2856443..2856586 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV171_RS13785 | 2853600..2855021 | + | 1422 | WP_071697355.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV171_RS13790 | 2855122..2855358 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV171_RS13795 | 2855461..2855652 | + | 192 | WP_003034941.1 | YebW family protein | - |
| HV171_RS13800 | 2855653..2856294 | - | 642 | WP_071697354.1 | protein-serine/threonine phosphatase | - |
| - | 2856443..2856586 | + | 144 | - | - | Antitoxin |
| - | 2856448..2856551 | - | 104 | - | - | Toxin |
| HV171_RS13805 | 2856707..2857045 | - | 339 | WP_071696726.1 | YebY family protein | - |
| HV171_RS13810 | 2857066..2857938 | - | 873 | WP_071696727.1 | copper homeostasis membrane protein CopD | - |
| HV171_RS13815 | 2857942..2858316 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV171_RS13820 | 2858942..2859529 | + | 588 | WP_106107223.1 | hypothetical protein | - |
| HV171_RS13825 | 2860022..2860213 | + | 192 | WP_008322661.1 | hypothetical protein | - |
| HV171_RS13830 | 2860533..2861444 | + | 912 | WP_181562371.1 | diguanylate cyclase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2855461..2926083 | 70622 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163731 NZ_CP056592:c2856551-2856448 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163731 NZ_CP056592:2856443-2856586 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
