Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2265519..2265664 | Replicon | chromosome |
| Accession | NZ_CP056567 | ||
| Organism | Klebsiella oxytoca strain RHBSTW-00373 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2265554..2265657 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2265519..2265664 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV180_RS10920 | 2260623..2262683 | + | 2061 | WP_049591825.1 | oligopeptidase B | - |
| HV180_RS10925 | 2262690..2263349 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| HV180_RS10930 | 2263428..2263658 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV180_RS10935 | 2263794..2264168 | + | 375 | WP_142447461.1 | CopC domain-containing protein YobA | - |
| HV180_RS10940 | 2264173..2265042 | + | 870 | WP_142447462.1 | copper homeostasis membrane protein CopD | - |
| HV180_RS10945 | 2265059..2265397 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2265519..2265664 | - | 146 | - | - | Antitoxin |
| - | 2265554..2265657 | + | 104 | - | - | Toxin |
| HV180_RS10950 | 2265784..2266743 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| HV180_RS10955 | 2266755..2269088 | - | 2334 | WP_047720986.1 | fimbrial biogenesis outer membrane usher protein | - |
| HV180_RS10960 | 2269091..2269855 | - | 765 | WP_004113760.1 | molecular chaperone | - |
| HV180_RS10965 | 2269873..2270391 | - | 519 | WP_049095940.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163690 NZ_CP056567:2265554-2265657 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT163690 NZ_CP056567:c2265664-2265519 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
