Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1932692..1932927 | Replicon | chromosome |
| Accession | NZ_CP056559 | ||
| Organism | Citrobacter freundii strain RHBSTW-00408 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1932818..1932921 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1932692..1932927 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV186_RS09130 | 1929238..1929900 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HV186_RS09135 | 1929924..1930580 | - | 657 | WP_181597097.1 | carbon-nitrogen hydrolase family protein | - |
| HV186_RS09140 | 1930687..1930911 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV186_RS09145 | 1931056..1931430 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HV186_RS09150 | 1931435..1932307 | + | 873 | WP_115258190.1 | copper homeostasis membrane protein CopD | - |
| HV186_RS09155 | 1932324..1932662 | + | 339 | WP_181491268.1 | YebY family protein | - |
| - | 1932692..1932927 | - | 236 | - | - | Antitoxin |
| - | 1932818..1932921 | + | 104 | - | - | Toxin |
| HV186_RS09160 | 1933076..1933717 | + | 642 | WP_181491303.1 | protein-serine/threonine phosphatase | - |
| HV186_RS09165 | 1933718..1933909 | - | 192 | WP_045444034.1 | YebW family protein | - |
| HV186_RS09170 | 1934012..1934248 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HV186_RS09175 | 1934349..1935770 | - | 1422 | WP_181491304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163672 NZ_CP056559:1932818-1932921 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT163672 NZ_CP056559:c1932927-1932692 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
