Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2221850..2221992 | Replicon | chromosome |
| Accession | NZ_CP056546 | ||
| Organism | Citrobacter sp. RHBSTW-00424 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2221885..2221988 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2221850..2221992 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV191_RS10875 | 2218297..2218959 | - | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
| HV191_RS10880 | 2218983..2219639 | - | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HV191_RS10885 | 2219746..2219976 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV191_RS10890 | 2220120..2220494 | + | 375 | WP_103283919.1 | CopC domain-containing protein YobA | - |
| HV191_RS10895 | 2220498..2221370 | + | 873 | WP_103283918.1 | copper homeostasis membrane protein CopD | - |
| HV191_RS10900 | 2221391..2221729 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2221850..2221992 | - | 143 | - | - | Antitoxin |
| - | 2221885..2221988 | + | 104 | - | - | Toxin |
| HV191_RS10905 | 2222066..2223151 | - | 1086 | WP_049040230.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV191_RS10910 | 2223120..2223392 | - | 273 | WP_049040229.1 | excisionase | - |
| HV191_RS10915 | 2223457..2223699 | - | 243 | WP_005121071.1 | DUF4060 family protein | - |
| HV191_RS10920 | 2223686..2224312 | - | 627 | WP_049040228.1 | morphogenetic protein | - |
| HV191_RS10925 | 2224305..2224649 | - | 345 | WP_049040227.1 | hypothetical protein | - |
| HV191_RS10930 | 2224684..2225724 | - | 1041 | WP_049040226.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2105882..2283021 | 177139 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163640 NZ_CP056546:2221885-2221988 [Citrobacter sp. RHBSTW-00424]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT163640 NZ_CP056546:c2221992-2221850 [Citrobacter sp. RHBSTW-00424]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
