Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061602..2061837 | Replicon | chromosome |
| Accession | NZ_CP056515 | ||
| Organism | Citrobacter freundii strain RHBSTW-00444 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061728..2061831 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061602..2061837 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV198_RS09595 | 2058148..2058810 | - | 663 | WP_181506897.1 | exodeoxyribonuclease X | - |
| HV198_RS09600 | 2058834..2059490 | - | 657 | WP_181506898.1 | carbon-nitrogen hydrolase family protein | - |
| HV198_RS09605 | 2059597..2059821 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV198_RS09610 | 2059966..2060340 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HV198_RS09615 | 2060345..2061217 | + | 873 | WP_135911869.1 | copper homeostasis membrane protein CopD | - |
| HV198_RS09620 | 2061234..2061572 | + | 339 | WP_146716933.1 | YebY family protein | - |
| - | 2061602..2061837 | - | 236 | - | - | Antitoxin |
| - | 2061728..2061831 | + | 104 | - | - | Toxin |
| HV198_RS09625 | 2061986..2062627 | + | 642 | WP_146716932.1 | protein-serine/threonine phosphatase | - |
| HV198_RS09630 | 2062628..2062819 | - | 192 | WP_045444034.1 | YebW family protein | - |
| HV198_RS09635 | 2062922..2063158 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HV198_RS09640 | 2063259..2064680 | - | 1422 | WP_181506899.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163598 NZ_CP056515:2061728-2061831 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT163598 NZ_CP056515:c2061837-2061602 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
