Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2255686..2255829 | Replicon | chromosome |
| Accession | NZ_CP056505 | ||
| Organism | Citrobacter freundii strain RHBSTW-00449 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2255721..2255824 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2255686..2255829 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV201_RS10970 | 2252133..2252795 | - | 663 | WP_048217917.1 | exodeoxyribonuclease X | - |
| HV201_RS10975 | 2252819..2253475 | - | 657 | WP_003034921.1 | carbon-nitrogen hydrolase family protein | - |
| HV201_RS10980 | 2253582..2253812 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV201_RS10985 | 2253956..2254330 | + | 375 | WP_181522793.1 | CopC domain-containing protein YobA | - |
| HV201_RS10990 | 2254334..2255206 | + | 873 | WP_061548577.1 | copper homeostasis membrane protein CopD | - |
| HV201_RS10995 | 2255227..2255565 | + | 339 | WP_061548576.1 | YebY family protein | - |
| - | 2255686..2255829 | - | 144 | - | - | Antitoxin |
| - | 2255721..2255824 | + | 104 | - | - | Toxin |
| HV201_RS11000 | 2255978..2256619 | + | 642 | WP_016150398.1 | protein-serine/threonine phosphatase | - |
| HV201_RS11005 | 2256620..2256811 | - | 192 | WP_003034941.1 | YebW family protein | - |
| HV201_RS11010 | 2256914..2257150 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV201_RS11015 | 2257251..2258672 | - | 1422 | WP_072291341.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2186726..2271597 | 84871 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163574 NZ_CP056505:2255721-2255824 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163574 NZ_CP056505:c2255829-2255686 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
