Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1934270..1934505 | Replicon | chromosome |
| Accession | NZ_CP056473 | ||
| Organism | Citrobacter freundii strain RHBSTW-00477 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1934396..1934499 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1934270..1934505 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV211_RS09025 | 1930816..1931478 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HV211_RS09030 | 1931502..1932158 | - | 657 | WP_181632144.1 | carbon-nitrogen hydrolase family protein | - |
| HV211_RS09035 | 1932265..1932489 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV211_RS09040 | 1932634..1933008 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HV211_RS09045 | 1933013..1933885 | + | 873 | WP_115258190.1 | copper homeostasis membrane protein CopD | - |
| HV211_RS09050 | 1933902..1934240 | + | 339 | WP_181632145.1 | YebY family protein | - |
| - | 1934270..1934505 | - | 236 | - | - | Antitoxin |
| - | 1934396..1934499 | + | 104 | - | - | Toxin |
| HV211_RS09055 | 1934654..1935295 | + | 642 | WP_137362932.1 | protein-serine/threonine phosphatase | - |
| HV211_RS09060 | 1935296..1935487 | - | 192 | WP_045444034.1 | YebW family protein | - |
| HV211_RS09065 | 1935590..1935826 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HV211_RS09070 | 1935927..1937348 | - | 1422 | WP_181632146.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163560 NZ_CP056473:1934396-1934499 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT163560 NZ_CP056473:c1934505-1934270 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
