Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4414317..4414833 Replicon chromosome
Accession NZ_CP056466
Organism Citrobacter freundii strain RHBSTW-00486

Toxin (Protein)


Gene name relE Uniprot ID A0A0J1MTE6
Locus tag HV214_RS21455 Protein ID WP_016149473.1
Coordinates 4414317..4414601 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A0J1MV10
Locus tag HV214_RS21460 Protein ID WP_003839576.1
Coordinates 4414591..4414833 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV214_RS21440 4409543..4411195 + 1653 WP_016149475.1 alpha,alpha-phosphotrehalase -
HV214_RS21445 4411604..4413742 + 2139 WP_003025782.1 anaerobic ribonucleoside-triphosphate reductase -
HV214_RS21450 4413849..4414313 + 465 WP_032937736.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
HV214_RS21455 4414317..4414601 - 285 WP_016149473.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HV214_RS21460 4414591..4414833 - 243 WP_003839576.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
HV214_RS21465 4414911..4416824 - 1914 WP_003844930.1 BglG family transcription antiterminator -
HV214_RS21470 4416846..4417586 - 741 WP_003025772.1 KDGP aldolase family protein -
HV214_RS21475 4417583..4418701 - 1119 WP_046670827.1 DgaE family pyridoxal phosphate-dependent ammonia lyase -
HV214_RS21480 4418685..4419818 - 1134 WP_016149471.1 amidohydrolase/deacetylase family metallohydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-69)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10878.73 Da        Isoelectric Point: 10.0482

>T163554 WP_016149473.1 NZ_CP056466:c4414601-4414317 [Citrobacter freundii]
MTYELEFDPRALKEWHKLGDTVKAQFKKKLADVLLNPRIDSARLNGLPDCYKIKLKSSGYRLVYQVRDEVVIVFVVAVGK
REHSAVYLDANKRL

Download         Length: 285 bp

>T163554 NZ_CP072680:c1414686-1414390 [Vibrio sp. SCSIO 43186]
ATGCAAAAGAACAAATACAAACTGAGTAAATTAGCTCAGACTCATTTACGGAAAATCAAAAGCTATACTGTTAACAACTT
CTCCGAGACCCAGTGGCGAAGCTATAAAGATACGTTACTAACTGGTTTTCAAATGCTTGCTGATAATCCAGCTGTTGGTC
GCAGTTGTGATGACATATACCCAAGCGGGTTCTATTTCCCCGCGGGCAAGCATACCGCTTACTTTACAAAAGAAGATTGC
TTCATTTTAGTTGTAGCCGTACTCGGACAATCACAACTTCCTCAGAACCACTTGTAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8961.34 Da        Isoelectric Point: 5.0651

>AT163554 WP_003839576.1 NZ_CP056466:c4414833-4414591 [Citrobacter freundii]
MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVTVSDSEDTLIQTVRERLASPQKGIKVSLDDL

Download         Length: 243 bp

>AT163554 NZ_CP072680:c1414935-1414693 [Vibrio sp. SCSIO 43186]
ATGCACACATTAACAGCAAATGATGCCAAACGTAATTTTGGTGAGCTACTTCTAAGCGCCCAACGTGAGCCTGTGAAGAT
TAGCAAAAACAGTAAAGATGCCGTCGTTGTAATGTCTATCAAGGACTATGAAGAACTAGAAGCAATGAAAACCGATTACC
TTAAGCACTGTTTCGAGTCAGCGAAACAAGACTTAGCTCAAGGAAATGTGGTTGATGGTGAAGACTTTTTAAACGCCTTA
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0J1MTE6

Antitoxin

Source ID Structure
AlphaFold DB A0A0J1MV10

References