Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2824338..2824481 | Replicon | chromosome |
| Accession | NZ_CP056466 | ||
| Organism | Citrobacter freundii strain RHBSTW-00486 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2824343..2824446 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2824338..2824481 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV214_RS13825 | 2821495..2822916 | + | 1422 | WP_071977990.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV214_RS13830 | 2823017..2823253 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV214_RS13835 | 2823356..2823547 | + | 192 | WP_003841978.1 | YebW family protein | - |
| HV214_RS13840 | 2823548..2824189 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| - | 2824338..2824481 | + | 144 | - | - | Antitoxin |
| - | 2824343..2824446 | - | 104 | - | - | Toxin |
| HV214_RS13845 | 2824602..2824940 | - | 339 | WP_003034934.1 | YebY family protein | - |
| HV214_RS13850 | 2824961..2825833 | - | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| HV214_RS13855 | 2825837..2826211 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV214_RS13860 | 2826355..2826585 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV214_RS13865 | 2826738..2828006 | - | 1269 | WP_009653618.1 | ISL3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2826738..2828006 | 1268 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163543 NZ_CP056466:c2824446-2824343 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163543 NZ_CP056466:2824338-2824481 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
