Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2752334..2752535 | Replicon | chromosome |
| Accession | NZ_CP056455 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00492 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2752339..2752442 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2752334..2752535 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV218_RS13245 | 2748581..2750044 | + | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV218_RS13250 | 2750149..2750388 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV218_RS13255 | 2750423..2751067 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV218_RS13260 | 2751235..2752215 | + | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV218_RS13265 | 2752261..2752458 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2752334..2752535 | + | 202 | - | - | Antitoxin |
| - | 2752339..2752442 | - | 104 | - | - | Toxin |
| HV218_RS13270 | 2752584..2752922 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV218_RS13275 | 2752939..2753808 | - | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV218_RS13280 | 2753810..2754181 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV218_RS13285 | 2754319..2754549 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV218_RS13290 | 2754661..2755299 | + | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV218_RS13295 | 2755324..2755986 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163523 NZ_CP056455:c2752442-2752339 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT163523 NZ_CP056455:2752334-2752535 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
