Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 175093..175619 | Replicon | plasmid pRHBSTW-00515_2 |
| Accession | NZ_CP056426 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00515 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | HV227_RS28320 | Protein ID | WP_000323025.1 |
| Coordinates | 175093..175380 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | J5W3H0 |
| Locus tag | HV227_RS28325 | Protein ID | WP_004196370.1 |
| Coordinates | 175380..175619 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV227_RS28290 | 170764..171081 | - | 318 | WP_015065519.1 | hypothetical protein | - |
| HV227_RS28295 | 171096..171446 | - | 351 | WP_032425551.1 | hypothetical protein | - |
| HV227_RS28300 | 171443..171715 | - | 273 | WP_032425552.1 | hypothetical protein | - |
| HV227_RS28305 | 172571..173683 | - | 1113 | WP_001300563.1 | IS4-like element IS421 family transposase | - |
| HV227_RS28310 | 173762..173920 | - | 159 | WP_014343509.1 | type I toxin-antitoxin system Hok family toxin | - |
| HV227_RS28315 | 173992..175026 | + | 1035 | Protein_190 | IS481-like element ISKpn28 family transposase | - |
| HV227_RS28320 | 175093..175380 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| HV227_RS28325 | 175380..175619 | - | 240 | WP_004196370.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| HV227_RS28330 | 175870..176235 | + | 366 | WP_009651956.1 | hypothetical protein | - |
| HV227_RS28335 | 176279..177016 | + | 738 | WP_008460272.1 | HupE/UreJ family protein | - |
| HV227_RS28340 | 177030..177719 | + | 690 | WP_004196322.1 | hypothetical protein | - |
| HV227_RS28345 | 177750..179126 | - | 1377 | Protein_196 | chromate efflux transporter | - |
| HV227_RS28350 | 179083..180060 | - | 978 | WP_004196334.1 | chromate resistance protein | - |
| HV227_RS28355 | 180090..180282 | + | 193 | Protein_198 | MFS transporter | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | mrkA / mrkB / mrkC / mrkD / mrkF / mrkJ | 1..220501 | 220501 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T163477 WP_000323025.1 NZ_CP056426:c175380-175093 [Klebsiella pneumoniae]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T163477 NZ_CP072602:1462257-1462838 [Burkholderia latens]
ATGAAGCTCGATACGATTCACGCGCGGCTCGATTTCCTGCGCGACGCCGAACGCCTGAAAGACGTGCTTCGCAGTGGCCA
TACGTCGGCCGGGCGCGCTGAAAGCACGGCCGAACACAGCTGGCGGCTATGCCTGATGGCACTCGTGTTTGCCGATGCGC
TACCCGACGTCGACACGACGAAGCTGCTGAAGCTCTGCGTCGTGCACGATCTCGGCGAAGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCTGACAAGAGCACACACGAACGCGACGACCTGCTGACGCTGACAGCCGGACTCGATCG
CGCGCTGCGCGACGAGATCGTCGCACTGTGGGACGAATATGAAGCGGCAGTCTCCCCGGAAGCACGCGCAGCGAAGGCGC
TCGACAAGCTGGAGACGATCATGCAGCACAACCAGGGCAGCAATCCGCCGGATTTCGACTACGCGTTCAATCTCGGCTAC
GGCCGGCGCTACACCGACGCGGCGCCGCTGTTCGGCGCGATCCGCGCGATCGTCGATGCGGACACGCAACGCAGGATCGA
TACTCGCGACGACGGCGCGTAA
ATGAAGCTCGATACGATTCACGCGCGGCTCGATTTCCTGCGCGACGCCGAACGCCTGAAAGACGTGCTTCGCAGTGGCCA
TACGTCGGCCGGGCGCGCTGAAAGCACGGCCGAACACAGCTGGCGGCTATGCCTGATGGCACTCGTGTTTGCCGATGCGC
TACCCGACGTCGACACGACGAAGCTGCTGAAGCTCTGCGTCGTGCACGATCTCGGCGAAGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCTGACAAGAGCACACACGAACGCGACGACCTGCTGACGCTGACAGCCGGACTCGATCG
CGCGCTGCGCGACGAGATCGTCGCACTGTGGGACGAATATGAAGCGGCAGTCTCCCCGGAAGCACGCGCAGCGAAGGCGC
TCGACAAGCTGGAGACGATCATGCAGCACAACCAGGGCAGCAATCCGCCGGATTTCGACTACGCGTTCAATCTCGGCTAC
GGCCGGCGCTACACCGACGCGGCGCCGCTGTTCGGCGCGATCCGCGCGATCGTCGATGCGGACACGCAACGCAGGATCGA
TACTCGCGACGACGGCGCGTAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9018.43 Da Isoelectric Point: 4.3894
>AT163477 WP_004196370.1 NZ_CP056426:c175619-175380 [Klebsiella pneumoniae]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
Download Length: 240 bp
>AT163477 NZ_CP072602:1461592-1462149 [Burkholderia latens]
ATGTGCGCGTCACCGCTTCATACTCCGCCGCTCGGCCCGCAACTCAAGCGTTGGCGCACGCTGCATCGCATGAAGCAGAG
TCACGCGGCGGAGTTGTTCGGCGTTGCGCAATCGACGATCTCGCGCTGGGAGGCCGGCATCCAGCAGATGTCCGCCGACG
AGCGCGCGATGGCCGAACGGCTGCTTGCCGCGCGTCTCGATTCAGCGGGCGATCGCGCGCTCGCCCGGCTGATCGAGAGC
AGCACGTCACGCATGCATCTCGTATGCGATCTCACGCACCGTCTGCTCGCCAGTTCGCCATCGCGCGCCGCCGAGTTCTC
GCGGCCGCTGGCGACGTTGCTCGGCACGTCGCTCTGGCGGTACGCGTCGCCGGAAATCGTCCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCGCGATTGCGCGGGACCGCCGAGCGTCGAATTCGCGACCGGCGCCAATGCGTCGCGCATCGTGCCG
ATCCGCGGCAGCACCTGCCGCTGGACGCGGATGATGCTGTCGGACGGCTCCGCCGCGCGACTCGTCGAAACGCTGTAG
ATGTGCGCGTCACCGCTTCATACTCCGCCGCTCGGCCCGCAACTCAAGCGTTGGCGCACGCTGCATCGCATGAAGCAGAG
TCACGCGGCGGAGTTGTTCGGCGTTGCGCAATCGACGATCTCGCGCTGGGAGGCCGGCATCCAGCAGATGTCCGCCGACG
AGCGCGCGATGGCCGAACGGCTGCTTGCCGCGCGTCTCGATTCAGCGGGCGATCGCGCGCTCGCCCGGCTGATCGAGAGC
AGCACGTCACGCATGCATCTCGTATGCGATCTCACGCACCGTCTGCTCGCCAGTTCGCCATCGCGCGCCGCCGAGTTCTC
GCGGCCGCTGGCGACGTTGCTCGGCACGTCGCTCTGGCGGTACGCGTCGCCGGAAATCGTCCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCGCGATTGCGCGGGACCGCCGAGCGTCGAATTCGCGACCGGCGCCAATGCGTCGCGCATCGTGCCG
ATCCGCGGCAGCACCTGCCGCTGGACGCGGATGATGCTGTCGGACGGCTCCGCCGCGCGACTCGTCGAAACGCTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|