Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1879967..1880112 | Replicon | chromosome |
| Accession | NZ_CP056425 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00515 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1880003..1880105 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1879967..1880112 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV227_RS09175 | 1875097..1877157 | + | 2061 | WP_181486760.1 | oligopeptidase B | - |
| HV227_RS09180 | 1877161..1877820 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV227_RS09185 | 1877899..1878129 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV227_RS09190 | 1878242..1878616 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV227_RS09195 | 1878620..1879489 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HV227_RS09200 | 1879506..1879844 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1879967..1880112 | - | 146 | - | - | Antitoxin |
| - | 1880003..1880105 | + | 103 | - | - | Toxin |
| HV227_RS09205 | 1880481..1880624 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV227_RS09210 | 1880729..1881697 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HV227_RS09215 | 1881854..1882507 | + | 654 | WP_064165395.1 | protein-serine/threonine phosphatase | - |
| HV227_RS09220 | 1882504..1882695 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV227_RS09225 | 1882793..1883032 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV227_RS09230 | 1883148..1884581 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T163461 NZ_CP056425:1880003-1880105 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT163461 NZ_CP056425:c1880112-1879967 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
