Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3031044..3031184 | Replicon | chromosome |
| Accession | NZ_CP056421 | ||
| Organism | Citrobacter sp. RHBSTW-00524 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3031046..3031149 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3031044..3031184 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV229_RS14695 | 3028249..3029295 | + | 1047 | WP_181547711.1 | recombinase RecT | - |
| HV229_RS14700 | 3029335..3029577 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| HV229_RS14705 | 3029642..3029914 | + | 273 | WP_072034353.1 | excisionase | - |
| HV229_RS14710 | 3029883..3030968 | + | 1086 | WP_047415377.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3031044..3031184 | + | 141 | - | - | Antitoxin |
| - | 3031046..3031149 | - | 104 | - | - | Toxin |
| HV229_RS14715 | 3031305..3031643 | - | 339 | WP_115190683.1 | YebY family protein | - |
| HV229_RS14720 | 3031664..3032536 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HV229_RS14725 | 3032540..3032914 | - | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| HV229_RS14730 | 3033058..3033288 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV229_RS14735 | 3033395..3034051 | + | 657 | WP_049271204.1 | carbon-nitrogen hydrolase family protein | - |
| HV229_RS14740 | 3034075..3034737 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2975422..3038407 | 62985 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163443 NZ_CP056421:c3031149-3031046 [Citrobacter sp. RHBSTW-00524]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT163443 NZ_CP056421:3031044-3031184 [Citrobacter sp. RHBSTW-00524]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
