Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020260..2020403 | Replicon | chromosome |
| Accession | NZ_CP056409 | ||
| Organism | Citrobacter sp. RHBSTW-00535 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020295..2020398 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020260..2020403 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV232_RS09660 | 2016707..2017369 | - | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
| HV232_RS09665 | 2017393..2018049 | - | 657 | WP_065554604.1 | carbon-nitrogen hydrolase family protein | - |
| HV232_RS09670 | 2018156..2018386 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV232_RS09675 | 2018530..2018904 | + | 375 | WP_016152775.1 | CopC domain-containing protein YobA | - |
| HV232_RS09680 | 2018908..2019780 | + | 873 | WP_065554605.1 | copper homeostasis membrane protein CopD | - |
| HV232_RS09685 | 2019801..2020139 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2020260..2020403 | - | 144 | - | - | Antitoxin |
| - | 2020295..2020398 | + | 104 | - | - | Toxin |
| HV232_RS09690 | 2020721..2022001 | + | 1281 | WP_065554644.1 | hypothetical protein | - |
| HV232_RS09695 | 2022079..2022720 | + | 642 | WP_094169037.1 | protein-serine/threonine phosphatase | - |
| HV232_RS09700 | 2022721..2022912 | - | 192 | WP_016152779.1 | YebW family protein | - |
| HV232_RS09705 | 2023015..2023251 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV232_RS09710 | 2023352..2024833 | - | 1482 | WP_139081557.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163424 NZ_CP056409:2020295-2020398 [Citrobacter sp. RHBSTW-00535]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163424 NZ_CP056409:c2020403-2020260 [Citrobacter sp. RHBSTW-00535]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
