Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3008770..3008913 | Replicon | chromosome |
| Accession | NZ_CP056399 | ||
| Organism | Citrobacter sp. RHBSTW-00570 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3008775..3008878 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3008770..3008913 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV237_RS14335 | 3004340..3005821 | + | 1482 | WP_135107968.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV237_RS14340 | 3005922..3006158 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV237_RS14345 | 3006261..3006452 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HV237_RS14350 | 3006453..3007094 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| HV237_RS14355 | 3007172..3008452 | - | 1281 | WP_047358580.1 | hypothetical protein | - |
| - | 3008770..3008913 | + | 144 | - | - | Antitoxin |
| - | 3008775..3008878 | - | 104 | - | - | Toxin |
| HV237_RS14360 | 3009034..3009372 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HV237_RS14365 | 3009393..3010265 | - | 873 | WP_046276427.1 | copper homeostasis membrane protein CopD | - |
| HV237_RS14370 | 3010269..3010643 | - | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| HV237_RS14375 | 3010787..3011017 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV237_RS14380 | 3011124..3011780 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HV237_RS14385 | 3011804..3012466 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163406 NZ_CP056399:c3008878-3008775 [Citrobacter sp. RHBSTW-00570]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163406 NZ_CP056399:3008770-3008913 [Citrobacter sp. RHBSTW-00570]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
