Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2832268..2832503 | Replicon | chromosome |
| Accession | NZ_CP056395 | ||
| Organism | Citrobacter freundii strain RHBSTW-00589 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2832274..2832377 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2832268..2832503 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV241_RS13585 | 2829425..2830846 | + | 1422 | WP_117342937.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV241_RS13590 | 2830947..2831183 | + | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HV241_RS13595 | 2831286..2831477 | + | 192 | WP_045444034.1 | YebW family protein | - |
| HV241_RS13600 | 2831478..2832119 | - | 642 | WP_181624432.1 | protein-serine/threonine phosphatase | - |
| - | 2832268..2832503 | + | 236 | - | - | Antitoxin |
| - | 2832274..2832377 | - | 104 | - | - | Toxin |
| HV241_RS13605 | 2832533..2832871 | - | 339 | WP_137362933.1 | YebY family protein | - |
| HV241_RS13610 | 2832888..2833760 | - | 873 | WP_115258190.1 | copper homeostasis membrane protein CopD | - |
| HV241_RS13615 | 2833765..2834139 | - | 375 | WP_181624433.1 | CopC domain-containing protein YobA | - |
| HV241_RS13620 | 2834284..2834508 | + | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV241_RS13625 | 2834615..2835271 | + | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| HV241_RS13630 | 2835295..2835957 | + | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163389 NZ_CP056395:c2832377-2832274 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT163389 NZ_CP056395:2832268-2832503 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
