Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2860794..2860946 | Replicon | chromosome |
| Accession | NZ_CP056393 | ||
| Organism | Enterobacter sp. RHBSTW-00593 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2860808..2860911 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2860794..2860946 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV242_RS13535 | 2857068..2858510 | + | 1443 | WP_079230852.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV242_RS13540 | 2858616..2858855 | + | 240 | WP_020883412.1 | YebV family protein | - |
| HV242_RS13545 | 2858890..2859534 | - | 645 | WP_063858488.1 | protein-serine/threonine phosphatase | - |
| HV242_RS13550 | 2859702..2860643 | + | 942 | WP_047356858.1 | VirK/YbjX family protein | - |
| - | 2860794..2860946 | + | 153 | - | - | Antitoxin |
| - | 2860808..2860911 | - | 104 | - | - | Toxin |
| HV242_RS13555 | 2861050..2861388 | - | 339 | WP_014170622.1 | YebY family protein | - |
| HV242_RS13560 | 2861405..2862274 | - | 870 | WP_040017778.1 | copper homeostasis membrane protein CopD | - |
| HV242_RS13565 | 2862276..2862647 | - | 372 | WP_063858489.1 | CopC domain-containing protein YobA | - |
| HV242_RS13570 | 2862785..2863015 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HV242_RS13575 | 2863125..2863775 | + | 651 | WP_063858490.1 | carbon-nitrogen hydrolase family protein | - |
| HV242_RS13580 | 2863800..2864462 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163372 NZ_CP056393:c2860911-2860808 [Enterobacter sp. RHBSTW-00593]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT163372 NZ_CP056393:2860794-2860946 [Enterobacter sp. RHBSTW-00593]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
