Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1828152..1828297 | Replicon | chromosome |
| Accession | NZ_CP056372 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00636 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1828188..1828290 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1828152..1828297 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV253_RS08930 | 1823282..1825342 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV253_RS08935 | 1825346..1826005 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV253_RS08940 | 1826084..1826314 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV253_RS08945 | 1826427..1826801 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV253_RS08950 | 1826805..1827674 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| HV253_RS08955 | 1827691..1828029 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1828152..1828297 | - | 146 | - | - | Antitoxin |
| - | 1828188..1828290 | + | 103 | - | - | Toxin |
| HV253_RS08960 | 1828665..1828808 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV253_RS08965 | 1828913..1829881 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HV253_RS08970 | 1830038..1830691 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| HV253_RS08975 | 1830688..1830879 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV253_RS08980 | 1830977..1831216 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV253_RS08985 | 1831332..1832765 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T163330 NZ_CP056372:1828188-1828290 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT163330 NZ_CP056372:c1828297-1828152 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
