Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123929..2124072 | Replicon | chromosome |
| Accession | NZ_CP056365 | ||
| Organism | Citrobacter freundii strain RHBSTW-00658 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123964..2124067 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123929..2124072 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV257_RS10155 | 2120376..2121038 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| HV257_RS10160 | 2121062..2121718 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| HV257_RS10165 | 2121825..2122055 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV257_RS10170 | 2122199..2122573 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV257_RS10175 | 2122577..2123449 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| HV257_RS10180 | 2123470..2123808 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2123929..2124072 | - | 144 | - | - | Antitoxin |
| - | 2123964..2124067 | + | 104 | - | - | Toxin |
| HV257_RS10185 | 2124221..2124862 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| HV257_RS10190 | 2124863..2125054 | - | 192 | WP_003034941.1 | YebW family protein | - |
| HV257_RS10195 | 2125157..2125393 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV257_RS10200 | 2125494..2126915 | - | 1422 | WP_071681312.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163312 NZ_CP056365:2123964-2124067 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163312 NZ_CP056365:c2124072-2123929 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
