Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2030099..2030240 | Replicon | chromosome |
| Accession | NZ_CP056314 | ||
| Organism | Citrobacter freundii strain RHBSTW-00830 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2030134..2030237 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2030099..2030240 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV290_RS09555 | 2026546..2027208 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| HV290_RS09560 | 2027232..2027888 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| HV290_RS09565 | 2027995..2028225 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV290_RS09570 | 2028369..2028743 | + | 375 | WP_086529333.1 | CopC domain-containing protein YobA | - |
| HV290_RS09575 | 2028747..2029619 | + | 873 | WP_086529332.1 | copper homeostasis membrane protein CopD | - |
| HV290_RS09580 | 2029640..2029978 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2030099..2030240 | - | 142 | - | - | Antitoxin |
| - | 2030134..2030237 | + | 104 | - | - | Toxin |
| HV290_RS09585 | 2030370..2031449 | - | 1080 | WP_136397057.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV290_RS09590 | 2031427..2031687 | - | 261 | WP_072211989.1 | hypothetical protein | - |
| HV290_RS09595 | 2031751..2034222 | - | 2472 | WP_148373976.1 | exonuclease | - |
| HV290_RS09600 | 2034364..2034690 | - | 327 | WP_181523356.1 | Rrf2 family transcriptional regulator | - |
| HV290_RS09605 | 2034748..2034984 | - | 237 | WP_181523363.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | aac(6')-If | - | 2022895..2105545 | 82650 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163275 NZ_CP056314:2030134-2030237 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT163275 NZ_CP056314:c2030240-2030099 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
