Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1975888..1976032 | Replicon | chromosome |
| Accession | NZ_CP056307 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00832 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1975924..1976026 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1975888..1976032 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV292_RS09725 | 1971018..1973078 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV292_RS09730 | 1973082..1973741 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| HV292_RS09735 | 1973820..1974050 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV292_RS09740 | 1974163..1974537 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV292_RS09745 | 1974541..1975410 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HV292_RS09750 | 1975427..1975765 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1975888..1976032 | - | 145 | - | - | Antitoxin |
| - | 1975924..1976026 | + | 103 | - | - | Toxin |
| HV292_RS09755 | 1976159..1976518 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| HV292_RS09760 | 1976517..1976996 | + | 480 | WP_064147222.1 | lysis protein | - |
| HV292_RS09765 | 1977785..1977976 | + | 192 | WP_064147221.1 | hypothetical protein | - |
| HV292_RS09770 | 1977927..1979291 | + | 1365 | WP_181247924.1 | hypothetical protein | - |
| HV292_RS09775 | 1979541..1979969 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HV292_RS09780 | 1979979..1980260 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T163252 NZ_CP056307:1975924-1976026 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT163252 NZ_CP056307:c1976032-1975888 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
