Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1894655..1894800 | Replicon | chromosome |
| Accession | NZ_CP056301 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00843 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1894691..1894793 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1894655..1894800 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV294_RS09165 | 1889785..1891845 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV294_RS09170 | 1891849..1892508 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV294_RS09175 | 1892587..1892817 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV294_RS09180 | 1892930..1893304 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV294_RS09185 | 1893308..1894177 | + | 870 | WP_040230666.1 | copper homeostasis membrane protein CopD | - |
| HV294_RS09190 | 1894194..1894532 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1894655..1894800 | - | 146 | - | - | Antitoxin |
| - | 1894691..1894793 | + | 103 | - | - | Toxin |
| HV294_RS09195 | 1895168..1895311 | - | 144 | WP_040230665.1 | Ecr family regulatory small membrane protein | - |
| HV294_RS09200 | 1895416..1896384 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| HV294_RS09205 | 1896541..1897194 | + | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| HV294_RS09210 | 1897191..1897382 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV294_RS09215 | 1897480..1897719 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV294_RS09220 | 1897835..1899268 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T163232 NZ_CP056301:1894691-1894793 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT163232 NZ_CP056301:c1894800-1894655 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
