Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1834367..1834512 | Replicon | chromosome |
| Accession | NZ_CP056297 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00852 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1834403..1834505 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1834367..1834512 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV298_RS08835 | 1829497..1831557 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV298_RS08840 | 1831561..1832220 | - | 660 | WP_064145948.1 | exodeoxyribonuclease X | - |
| HV298_RS08845 | 1832299..1832529 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV298_RS08850 | 1832642..1833016 | + | 375 | WP_064145947.1 | CopC domain-containing protein YobA | - |
| HV298_RS08855 | 1833020..1833889 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HV298_RS08860 | 1833906..1834244 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1834367..1834512 | - | 146 | - | - | Antitoxin |
| - | 1834403..1834505 | + | 103 | - | - | Toxin |
| HV298_RS08865 | 1834880..1835023 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV298_RS08870 | 1835128..1836096 | - | 969 | WP_074185711.1 | DUF535 family protein | - |
| HV298_RS08875 | 1836253..1836906 | + | 654 | WP_117082553.1 | protein-serine/threonine phosphatase | - |
| HV298_RS08880 | 1836903..1837094 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV298_RS08885 | 1837192..1837431 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV298_RS08890 | 1837547..1838980 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T163214 NZ_CP056297:1834403-1834505 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT163214 NZ_CP056297:c1834512-1834367 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
