Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1867565..1867710 | Replicon | chromosome |
| Accession | NZ_CP056275 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00867 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1867601..1867703 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1867565..1867710 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV307_RS09030 | 1862695..1864755 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV307_RS09035 | 1864759..1865418 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV307_RS09040 | 1865497..1865727 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV307_RS09045 | 1865840..1866214 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV307_RS09050 | 1866218..1867087 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HV307_RS09055 | 1867104..1867442 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1867565..1867710 | - | 146 | - | - | Antitoxin |
| - | 1867601..1867703 | + | 103 | - | - | Toxin |
| HV307_RS09060 | 1868078..1868221 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV307_RS09065 | 1868326..1869294 | - | 969 | WP_074195444.1 | DUF535 family protein | - |
| HV307_RS09070 | 1869451..1870104 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HV307_RS09075 | 1870101..1870292 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV307_RS09080 | 1870390..1870629 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV307_RS09085 | 1870745..1872178 | - | 1434 | WP_181475345.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T163193 NZ_CP056275:1867601-1867703 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT163193 NZ_CP056275:c1867710-1867565 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
