Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2032914..2033052 | Replicon | chromosome |
| Accession | NZ_CP056260 | ||
| Organism | Klebsiella aerogenes strain RHBSTW-00898 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2032949..2033052 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2032914..2033052 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV316_RS09680 | 2028023..2030083 | + | 2061 | WP_032705952.1 | oligopeptidase B | - |
| HV316_RS09685 | 2030086..2030745 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| HV316_RS09690 | 2030825..2031055 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| HV316_RS09695 | 2031190..2031564 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| HV316_RS09700 | 2031568..2032437 | + | 870 | WP_032705951.1 | copper homeostasis membrane protein CopD | - |
| HV316_RS09705 | 2032451..2032792 | + | 342 | WP_015366010.1 | YebY family protein | - |
| - | 2032914..2033052 | - | 139 | - | - | Antitoxin |
| - | 2032949..2033052 | + | 104 | - | - | Toxin |
| HV316_RS09710 | 2033184..2034263 | - | 1080 | WP_032708609.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV316_RS09715 | 2034238..2034510 | - | 273 | WP_071609883.1 | excisionase | - |
| HV316_RS09720 | 2034577..2034969 | - | 393 | WP_125961766.1 | hypothetical protein | - |
| HV316_RS09725 | 2034999..2035502 | - | 504 | WP_032716233.1 | siphovirus Gp157 family protein | - |
| HV316_RS09730 | 2035499..2037835 | - | 2337 | WP_032716232.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2028023..2088575 | 60552 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163171 NZ_CP056260:2032949-2033052 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT163171 NZ_CP056260:c2033052-2032914 [Klebsiella aerogenes]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
