Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2348287..2348429 | Replicon | chromosome |
| Accession | NZ_CP056251 | ||
| Organism | Citrobacter sp. RHBSTW-00903 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2348322..2348425 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2348287..2348429 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV320_RS11715 | 2344734..2345396 | - | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
| HV320_RS11720 | 2345420..2346076 | - | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HV320_RS11725 | 2346183..2346413 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV320_RS11730 | 2346557..2346931 | + | 375 | WP_103283919.1 | CopC domain-containing protein YobA | - |
| HV320_RS11735 | 2346935..2347807 | + | 873 | WP_103283918.1 | copper homeostasis membrane protein CopD | - |
| HV320_RS11740 | 2347828..2348166 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2348287..2348429 | - | 143 | - | - | Antitoxin |
| - | 2348322..2348425 | + | 104 | - | - | Toxin |
| HV320_RS11745 | 2348503..2349588 | - | 1086 | WP_049040230.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV320_RS11750 | 2349557..2349829 | - | 273 | WP_049040229.1 | excisionase | - |
| HV320_RS11755 | 2349894..2350136 | - | 243 | WP_005121071.1 | DUF4060 family protein | - |
| HV320_RS11760 | 2350123..2350749 | - | 627 | WP_049040228.1 | morphogenetic protein | - |
| HV320_RS11765 | 2350742..2351086 | - | 345 | WP_049040227.1 | hypothetical protein | - |
| HV320_RS11770 | 2351121..2352161 | - | 1041 | WP_049040226.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2342653..2406785 | 64132 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163131 NZ_CP056251:2348322-2348425 [Citrobacter sp. RHBSTW-00903]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT163131 NZ_CP056251:c2348429-2348287 [Citrobacter sp. RHBSTW-00903]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
