Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950183..1950416 | Replicon | chromosome |
| Accession | NZ_CP056244 | ||
| Organism | Citrobacter freundii strain RHBSTW-00923 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950309..1950412 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950183..1950416 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV327_RS09065 | 1946729..1947391 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HV327_RS09070 | 1947415..1948071 | - | 657 | WP_153879980.1 | carbon-nitrogen hydrolase family protein | - |
| HV327_RS09075 | 1948178..1948402 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV327_RS09080 | 1948547..1948921 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HV327_RS09085 | 1948926..1949798 | + | 873 | WP_115258190.1 | copper homeostasis membrane protein CopD | - |
| HV327_RS09090 | 1949815..1950153 | + | 339 | WP_181518176.1 | YebY family protein | - |
| - | 1950183..1950416 | - | 234 | - | - | Antitoxin |
| - | 1950309..1950412 | + | 104 | - | - | Toxin |
| HV327_RS09095 | 1950490..1951227 | - | 738 | Protein_1778 | tyrosine-type recombinase/integrase | - |
| HV327_RS09100 | 1951229..1951804 | + | 576 | Protein_1779 | antiterminator | - |
| HV327_RS09105 | 1951985..1952482 | - | 498 | WP_135911947.1 | hypothetical protein | - |
| HV327_RS09110 | 1952916..1953194 | + | 279 | WP_016150496.1 | hypothetical protein | - |
| HV327_RS09115 | 1953166..1953714 | + | 549 | WP_060683645.1 | lysozyme | - |
| HV327_RS09120 | 1953711..1954229 | + | 519 | WP_181518177.1 | DUF2514 domain-containing protein | - |
| HV327_RS09125 | 1954316..1954771 | + | 456 | WP_021571192.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1944648..1977166 | 32518 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163095 NZ_CP056244:1950309-1950412 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 234 bp
>AT163095 NZ_CP056244:c1950416-1950183 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
