Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2144624..2144767 | Replicon | chromosome |
| Accession | NZ_CP056232 | ||
| Organism | Citrobacter freundii strain RHBSTW-00965 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2144659..2144762 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2144624..2144767 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV336_RS10110 | 2141071..2141733 | - | 663 | WP_181510874.1 | exodeoxyribonuclease X | - |
| HV336_RS10115 | 2141757..2142413 | - | 657 | WP_181510875.1 | carbon-nitrogen hydrolase family protein | - |
| HV336_RS10120 | 2142520..2142750 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV336_RS10125 | 2142894..2143268 | + | 375 | WP_123267385.1 | CopC domain-containing protein YobA | - |
| HV336_RS10130 | 2143272..2144144 | + | 873 | WP_181510876.1 | copper homeostasis membrane protein CopD | - |
| HV336_RS10135 | 2144165..2144503 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2144624..2144767 | - | 144 | - | - | Antitoxin |
| - | 2144659..2144762 | + | 104 | - | - | Toxin |
| HV336_RS10140 | 2144916..2145557 | + | 642 | WP_181510877.1 | protein-serine/threonine phosphatase | - |
| HV336_RS10145 | 2145558..2145749 | - | 192 | WP_181511152.1 | YebW family protein | - |
| HV336_RS10150 | 2145852..2146088 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV336_RS10155 | 2146189..2147634 | - | 1446 | WP_181511153.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2077972..2150326 | 72354 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163053 NZ_CP056232:2144659-2144762 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163053 NZ_CP056232:c2144767-2144624 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
