Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1930036..1930269 | Replicon | chromosome |
| Accession | NZ_CP056229 | ||
| Organism | Citrobacter freundii strain RHBSTW-00968 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1930162..1930265 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1930036..1930269 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV337_RS09055 | 1926582..1927244 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HV337_RS09060 | 1927268..1927924 | - | 657 | WP_181491267.1 | carbon-nitrogen hydrolase family protein | - |
| HV337_RS09065 | 1928031..1928255 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HV337_RS09070 | 1928400..1928774 | + | 375 | WP_115258189.1 | CopC domain-containing protein YobA | - |
| HV337_RS09075 | 1928779..1929651 | + | 873 | WP_115258190.1 | copper homeostasis membrane protein CopD | - |
| HV337_RS09080 | 1929668..1930006 | + | 339 | WP_181491268.1 | YebY family protein | - |
| - | 1930036..1930269 | - | 234 | - | - | Antitoxin |
| - | 1930162..1930265 | + | 104 | - | - | Toxin |
| HV337_RS09085 | 1930343..1931428 | - | 1086 | WP_181491269.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HV337_RS09090 | 1931397..1931669 | - | 273 | WP_032170291.1 | excisionase | - |
| HV337_RS09095 | 1931733..1931975 | - | 243 | WP_001237028.1 | DUF4060 family protein | - |
| HV337_RS09100 | 1931962..1932165 | - | 204 | WP_103285408.1 | hypothetical protein | - |
| HV337_RS09105 | 1932158..1932502 | - | 345 | WP_110497740.1 | hypothetical protein | - |
| HV337_RS09110 | 1932537..1933649 | - | 1113 | WP_137398778.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1924501..1988493 | 63992 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163034 NZ_CP056229:1930162-1930265 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 234 bp
>AT163034 NZ_CP056229:c1930269-1930036 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGCC
TGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
