Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1832045..1832190 | Replicon | chromosome |
| Accession | NZ_CP056216 | ||
| Organism | Klebsiella pneumoniae strain RHBSTW-00982 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1832081..1832183 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1832045..1832190 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV343_RS08830 | 1827175..1829235 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HV343_RS08835 | 1829239..1829898 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HV343_RS08840 | 1829977..1830207 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV343_RS08845 | 1830320..1830694 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HV343_RS08850 | 1830698..1831567 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| HV343_RS08855 | 1831584..1831922 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1832045..1832190 | - | 146 | - | - | Antitoxin |
| - | 1832081..1832183 | + | 103 | - | - | Toxin |
| HV343_RS08860 | 1832558..1832701 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HV343_RS08865 | 1832806..1833774 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HV343_RS08870 | 1833931..1834584 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| HV343_RS08875 | 1834581..1834772 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV343_RS08880 | 1834870..1835109 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV343_RS08885 | 1835225..1836658 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T162992 NZ_CP056216:1832081-1832183 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT162992 NZ_CP056216:c1832190-1832045 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
