Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2854403..2854546 | Replicon | chromosome |
| Accession | NZ_CP056200 | ||
| Organism | Citrobacter sp. RHBSTW-00986 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2854408..2854511 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2854403..2854546 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV345_RS13985 | 2849973..2851454 | + | 1482 | WP_131352116.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV345_RS13990 | 2851555..2851791 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV345_RS13995 | 2851894..2852085 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HV345_RS14000 | 2852086..2852727 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| HV345_RS14005 | 2852805..2854085 | - | 1281 | WP_181598325.1 | hypothetical protein | - |
| - | 2854403..2854546 | + | 144 | - | - | Antitoxin |
| - | 2854408..2854511 | - | 104 | - | - | Toxin |
| HV345_RS14010 | 2854667..2855005 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HV345_RS14015 | 2855026..2855898 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HV345_RS14020 | 2855902..2856276 | - | 375 | WP_049271207.1 | CopC domain-containing protein YobA | - |
| HV345_RS14025 | 2856420..2856650 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV345_RS14030 | 2856757..2857413 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HV345_RS14035 | 2857437..2858099 | + | 663 | WP_181635704.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162973 NZ_CP056200:c2854511-2854408 [Citrobacter sp. RHBSTW-00986]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT162973 NZ_CP056200:2854403-2854546 [Citrobacter sp. RHBSTW-00986]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
