Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2771174..2771349 Replicon chromosome
Accession NZ_CP056199
Organism Enterobacter sp. RHBSTW-00994

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2771180..2771284 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2771174..2771349 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV346_RS13285 2767212..2767451 + 240 WP_181619807.1 YebV family protein -
HV346_RS13290 2767486..2768130 - 645 WP_181619808.1 protein-serine/threonine phosphatase -
HV346_RS13295 2768310..2769251 + 942 WP_181619809.1 VirK/YbjX family protein -
HV346_RS13300 2769461..2770975 + 1515 WP_181619810.1 diguanylate cyclase -
- 2771174..2771349 + 176 - - Antitoxin
- 2771180..2771284 - 105 - - Toxin
HV346_RS13305 2771425..2771763 - 339 WP_181619811.1 YebY family protein -
HV346_RS13310 2771780..2772649 - 870 WP_181619812.1 copper homeostasis membrane protein CopD -
HV346_RS13315 2772651..2773025 - 375 WP_181619813.1 CopC domain-containing protein YobA -
HV346_RS13320 2773163..2773393 + 231 WP_181619814.1 DNA polymerase III subunit theta -
HV346_RS13325 2773505..2774155 + 651 WP_181619815.1 carbon-nitrogen hydrolase family protein -
HV346_RS13330 2774180..2774842 + 663 WP_181619816.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 105 bp

>T162959 NZ_CP056199:c2771284-2771180 [Enterobacter sp. RHBSTW-00994]
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 176 bp

>AT162959 NZ_CP056199:2771174-2771349 [Enterobacter sp. RHBSTW-00994]
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAAATCGCCTTGCCTCTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAACGTG
GCCTAAAAAAAAGCGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References