Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2771174..2771349 | Replicon | chromosome |
Accession | NZ_CP056199 | ||
Organism | Enterobacter sp. RHBSTW-00994 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2771180..2771284 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2771174..2771349 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HV346_RS13285 | 2767212..2767451 | + | 240 | WP_181619807.1 | YebV family protein | - |
HV346_RS13290 | 2767486..2768130 | - | 645 | WP_181619808.1 | protein-serine/threonine phosphatase | - |
HV346_RS13295 | 2768310..2769251 | + | 942 | WP_181619809.1 | VirK/YbjX family protein | - |
HV346_RS13300 | 2769461..2770975 | + | 1515 | WP_181619810.1 | diguanylate cyclase | - |
- | 2771174..2771349 | + | 176 | - | - | Antitoxin |
- | 2771180..2771284 | - | 105 | - | - | Toxin |
HV346_RS13305 | 2771425..2771763 | - | 339 | WP_181619811.1 | YebY family protein | - |
HV346_RS13310 | 2771780..2772649 | - | 870 | WP_181619812.1 | copper homeostasis membrane protein CopD | - |
HV346_RS13315 | 2772651..2773025 | - | 375 | WP_181619813.1 | CopC domain-containing protein YobA | - |
HV346_RS13320 | 2773163..2773393 | + | 231 | WP_181619814.1 | DNA polymerase III subunit theta | - |
HV346_RS13325 | 2773505..2774155 | + | 651 | WP_181619815.1 | carbon-nitrogen hydrolase family protein | - |
HV346_RS13330 | 2774180..2774842 | + | 663 | WP_181619816.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T162959 NZ_CP056199:c2771284-2771180 [Enterobacter sp. RHBSTW-00994]
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 176 bp
>AT162959 NZ_CP056199:2771174-2771349 [Enterobacter sp. RHBSTW-00994]
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAAATCGCCTTGCCTCTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAACGTG
GCCTAAAAAAAAGCGT
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAAATCGCCTTGCCTCTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAACGTG
GCCTAAAAAAAAGCGT