Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3015819..3015959 | Replicon | chromosome |
| Accession | NZ_CP056185 | ||
| Organism | Citrobacter sp. RHBSTW-01013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3015821..3015924 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3015819..3015959 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV350_RS14595 | 3011791..3013272 | + | 1482 | WP_181630665.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV350_RS14600 | 3013373..3013609 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV350_RS14605 | 3013712..3013903 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HV350_RS14610 | 3013904..3014545 | - | 642 | Protein_2872 | protein-serine/threonine phosphatase | - |
| HV350_RS14615 | 3014867..3015358 | - | 492 | WP_181628796.1 | GIY-YIG nuclease family protein | - |
| HV350_RS14620 | 3015359..3015466 | - | 108 | WP_101699979.1 | GIY-YIG nuclease family protein | - |
| - | 3015819..3015959 | + | 141 | - | - | Antitoxin |
| - | 3015821..3015924 | - | 104 | - | - | Toxin |
| HV350_RS14625 | 3016080..3016418 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HV350_RS14630 | 3016439..3017311 | - | 873 | WP_137379898.1 | copper homeostasis membrane protein CopD | - |
| HV350_RS14635 | 3017315..3017689 | - | 375 | WP_181628797.1 | CopC domain-containing protein YobA | - |
| HV350_RS14640 | 3017833..3018063 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV350_RS14645 | 3018170..3018826 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HV350_RS14650 | 3018850..3019512 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162915 NZ_CP056185:c3015924-3015821 [Citrobacter sp. RHBSTW-01013]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT162915 NZ_CP056185:3015819-3015959 [Citrobacter sp. RHBSTW-01013]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
