Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2819246..2819386 | Replicon | chromosome |
| Accession | NZ_CP056180 | ||
| Organism | Citrobacter sp. RHBSTW-01044 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2819248..2819351 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2819246..2819386 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV352_RS13695 | 2816451..2817497 | + | 1047 | WP_181635476.1 | recombinase RecT | - |
| HV352_RS13700 | 2817537..2817779 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| HV352_RS13705 | 2817844..2818116 | + | 273 | WP_072034353.1 | excisionase | - |
| HV352_RS13710 | 2818085..2819170 | + | 1086 | WP_047415377.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2819246..2819386 | + | 141 | - | - | Antitoxin |
| - | 2819248..2819351 | - | 104 | - | - | Toxin |
| HV352_RS13715 | 2819507..2819845 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HV352_RS13720 | 2819866..2820738 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HV352_RS13725 | 2820742..2821116 | - | 375 | WP_131381113.1 | CopC domain-containing protein YobA | - |
| HV352_RS13730 | 2821260..2821490 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV352_RS13735 | 2821597..2822253 | + | 657 | WP_049271204.1 | carbon-nitrogen hydrolase family protein | - |
| HV352_RS13740 | 2822277..2822939 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162894 NZ_CP056180:c2819351-2819248 [Citrobacter sp. RHBSTW-01044]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT162894 NZ_CP056180:2819246-2819386 [Citrobacter sp. RHBSTW-01044]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
