Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 331120..331365 | Replicon | chromosome |
| Accession | NZ_CP056159 | ||
| Organism | Escherichia marmotae strain RHBSTW-00814 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 331248..331351 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 331120..331365 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV284_RS01720 | 327673..328335 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| HV284_RS01725 | 328360..329016 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein | - |
| HV284_RS01730 | 329117..329347 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| HV284_RS01735 | 329486..329860 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| HV284_RS01740 | 329864..330736 | + | 873 | WP_181474666.1 | copper homeostasis membrane protein CopD | - |
| HV284_RS01745 | 330749..331090 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 331120..331365 | - | 246 | - | - | Antitoxin |
| - | 331248..331351 | + | 104 | - | - | Toxin |
| HV284_RS01750 | 331500..332156 | + | 657 | WP_181474667.1 | protein-serine/threonine phosphatase | - |
| HV284_RS01755 | 332157..332348 | - | 192 | WP_001516263.1 | YebW family protein | - |
| HV284_RS01760 | 332453..332689 | - | 237 | WP_001516264.1 | DUF1480 family protein | - |
| HV284_RS01765 | 332805..334244 | - | 1440 | WP_061090891.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162819 NZ_CP056159:331248-331351 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT162819 NZ_CP056159:c331365-331120 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
