Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2339472..2339640 | Replicon | chromosome |
| Accession | NZ_CP056150 | ||
| Organism | Klebsiella grimontii strain RHBSTW-00853 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2339530..2339633 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2339472..2339640 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV299_RS11370 | 2334599..2336659 | + | 2061 | WP_154915152.1 | oligopeptidase B | - |
| HV299_RS11375 | 2336666..2337325 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| HV299_RS11380 | 2337404..2337634 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV299_RS11385 | 2337770..2338144 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| HV299_RS11390 | 2338149..2339018 | + | 870 | WP_154957048.1 | copper homeostasis membrane protein CopD | - |
| HV299_RS11395 | 2339035..2339373 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2339472..2339640 | - | 169 | - | - | Antitoxin |
| - | 2339530..2339633 | + | 104 | - | - | Toxin |
| HV299_RS11400 | 2339758..2340717 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| HV299_RS11405 | 2340732..2343062 | - | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| HV299_RS11410 | 2343065..2343829 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| HV299_RS11415 | 2343848..2344366 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162777 NZ_CP056150:2339530-2339633 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT162777 NZ_CP056150:c2339640-2339472 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
