Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2812995..2813138 | Replicon | chromosome |
| Accession | NZ_CP056148 | ||
| Organism | Enterobacter roggenkampii strain RHBSTW-00872 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2813000..2813103 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2812995..2813138 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV308_RS13605 | 2809262..2810704 | + | 1443 | WP_059360361.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV308_RS13610 | 2810811..2811050 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HV308_RS13615 | 2811085..2811729 | - | 645 | WP_059360363.1 | protein-serine/threonine phosphatase | - |
| HV308_RS13620 | 2811895..2812836 | + | 942 | WP_059360365.1 | VirK/YbjX family protein | - |
| - | 2812995..2813138 | + | 144 | - | - | Antitoxin |
| - | 2813000..2813103 | - | 104 | - | - | Toxin |
| HV308_RS13625 | 2813242..2813580 | - | 339 | WP_008500468.1 | YebY family protein | - |
| HV308_RS13630 | 2813597..2814466 | - | 870 | WP_058653387.1 | copper homeostasis membrane protein CopD | - |
| HV308_RS13635 | 2814468..2814839 | - | 372 | WP_059360369.1 | CopC domain-containing protein YobA | - |
| HV308_RS13640 | 2814977..2815207 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| HV308_RS13645 | 2815318..2815968 | + | 651 | Protein_2674 | carbon-nitrogen hydrolase family protein | - |
| HV308_RS13650 | 2815993..2816655 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162762 NZ_CP056148:c2813103-2813000 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT162762 NZ_CP056148:2812995-2813138 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
