Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972050..1972194 | Replicon | chromosome |
| Accession | NZ_CP056145 | ||
| Organism | Klebsiella variicola strain RHBSTW-00883 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972086..1972188 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972050..1972194 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV312_RS09500 | 1967180..1969240 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| HV312_RS09505 | 1969244..1969903 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| HV312_RS09510 | 1969982..1970212 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| HV312_RS09515 | 1970326..1970700 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| HV312_RS09520 | 1970704..1971573 | + | 870 | WP_117113810.1 | copper homeostasis membrane protein CopD | - |
| HV312_RS09525 | 1971590..1971928 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1972050..1972194 | - | 145 | - | - | Antitoxin |
| - | 1972086..1972188 | + | 103 | - | - | Toxin |
| HV312_RS09530 | 1972573..1972716 | - | 144 | WP_142667623.1 | Ecr family regulatory small membrane protein | - |
| HV312_RS09535 | 1972820..1973788 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| HV312_RS09540 | 1973945..1974598 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| HV312_RS09545 | 1974595..1974786 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV312_RS09550 | 1974884..1975123 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV312_RS09555 | 1975239..1976672 | - | 1434 | WP_080930221.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T162743 NZ_CP056145:1972086-1972188 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT162743 NZ_CP056145:c1972194-1972050 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
