Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2699061..2699262 | Replicon | chromosome |
| Accession | NZ_CP056132 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00916 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2699066..2699169 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2699061..2699262 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV326_RS12930 | 2695306..2696769 | + | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV326_RS12935 | 2696876..2697115 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV326_RS12940 | 2697150..2697794 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV326_RS12945 | 2697962..2698942 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| HV326_RS12950 | 2698988..2699185 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2699061..2699262 | + | 202 | - | - | Antitoxin |
| - | 2699066..2699169 | - | 104 | - | - | Toxin |
| HV326_RS12955 | 2699310..2699648 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HV326_RS12960 | 2699665..2700534 | - | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV326_RS12965 | 2700536..2700907 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV326_RS12970 | 2701045..2701275 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV326_RS12975 | 2701387..2702037 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV326_RS12980 | 2702062..2702724 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2689951..2752205 | 62254 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162725 NZ_CP056132:c2699169-2699066 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT162725 NZ_CP056132:2699061-2699262 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
