Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 3983375..3983527 | Replicon | chromosome |
Accession | NZ_CP056119 | ||
Organism | Enterobacter ludwigii strain D42-sc-1712201 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 3983410..3983513 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 3983375..3983527 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HWQ18_RS18965 | 3979859..3980521 | - | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
HWQ18_RS18970 | 3980546..3981196 | - | 651 | WP_032680779.1 | carbon-nitrogen hydrolase family protein | - |
HWQ18_RS18975 | 3981306..3981536 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
HWQ18_RS18980 | 3981674..3982045 | + | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
HWQ18_RS18985 | 3982047..3982916 | + | 870 | WP_032680780.1 | copper homeostasis membrane protein CopD | - |
HWQ18_RS18990 | 3982933..3983271 | + | 339 | WP_014170622.1 | YebY family protein | - |
- | 3983375..3983527 | - | 153 | - | - | Antitoxin |
- | 3983410..3983513 | + | 104 | - | - | Toxin |
HWQ18_RS18995 | 3983678..3984619 | - | 942 | WP_020883410.1 | VirK/YbjX family protein | - |
HWQ18_RS19000 | 3984787..3985431 | + | 645 | WP_032680781.1 | protein-serine/threonine phosphatase | - |
HWQ18_RS19005 | 3985466..3985705 | - | 240 | WP_020883412.1 | YebV family protein | - |
HWQ18_RS19010 | 3985811..3987253 | - | 1443 | WP_032680782.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162669 NZ_CP056119:3983410-3983513 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT162669 NZ_CP056119:c3983527-3983375 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT