Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3983375..3983527 Replicon chromosome
Accession NZ_CP056119
Organism Enterobacter ludwigii strain D42-sc-1712201

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3983410..3983513 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3983375..3983527 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HWQ18_RS18965 3979859..3980521 - 663 WP_014170626.1 exodeoxyribonuclease X -
HWQ18_RS18970 3980546..3981196 - 651 WP_032680779.1 carbon-nitrogen hydrolase family protein -
HWQ18_RS18975 3981306..3981536 - 231 WP_013096102.1 DNA polymerase III subunit theta -
HWQ18_RS18980 3981674..3982045 + 372 WP_020883407.1 CopC domain-containing protein YobA -
HWQ18_RS18985 3982047..3982916 + 870 WP_032680780.1 copper homeostasis membrane protein CopD -
HWQ18_RS18990 3982933..3983271 + 339 WP_014170622.1 YebY family protein -
- 3983375..3983527 - 153 - - Antitoxin
- 3983410..3983513 + 104 - - Toxin
HWQ18_RS18995 3983678..3984619 - 942 WP_020883410.1 VirK/YbjX family protein -
HWQ18_RS19000 3984787..3985431 + 645 WP_032680781.1 protein-serine/threonine phosphatase -
HWQ18_RS19005 3985466..3985705 - 240 WP_020883412.1 YebV family protein -
HWQ18_RS19010 3985811..3987253 - 1443 WP_032680782.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T162669 NZ_CP056119:3983410-3983513 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 153 bp

>AT162669 NZ_CP056119:c3983527-3983375 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References