Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4557829..4558030 | Replicon | chromosome |
| Accession | NZ_CP056118 | ||
| Organism | Enterobacter sp. DSM 30060 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4557834..4557937 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4557829..4558030 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWQ15_RS21700 | 4554076..4555539 | + | 1464 | WP_063148577.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HWQ15_RS21705 | 4555644..4555883 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HWQ15_RS21710 | 4555918..4556562 | - | 645 | WP_063148576.1 | protein-serine/threonine phosphatase | - |
| HWQ15_RS21715 | 4556730..4557710 | + | 981 | WP_023300363.1 | VirK/YbjX family protein | - |
| HWQ15_RS21720 | 4557756..4557953 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 4557829..4558030 | + | 202 | - | - | Antitoxin |
| - | 4557834..4557937 | - | 104 | - | - | Toxin |
| HWQ15_RS21725 | 4558079..4558417 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HWQ15_RS21730 | 4558434..4559303 | - | 870 | WP_063148575.1 | copper homeostasis membrane protein CopD | - |
| HWQ15_RS21735 | 4559305..4559676 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HWQ15_RS21740 | 4559814..4560044 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HWQ15_RS21745 | 4560156..4560794 | + | 639 | WP_063148574.1 | carbon-nitrogen hydrolase family protein | - |
| HWQ15_RS21750 | 4560819..4561481 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162657 NZ_CP056118:c4557937-4557834 [Enterobacter sp. DSM 30060]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT162657 NZ_CP056118:4557829-4558030 [Enterobacter sp. DSM 30060]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
