Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4142388..4142656 | Replicon | chromosome |
| Accession | NZ_CP056077 | ||
| Organism | Escherichia coli strain MS1170 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4142516..4142618 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4142388..4142656 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HED12_RS20220 | 4138942..4139604 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HED12_RS20225 | 4139627..4140283 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HED12_RS20230 | 4140385..4140615 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HED12_RS20235 | 4140754..4141128 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HED12_RS20240 | 4141132..4142004 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HED12_RS20245 | 4142017..4142358 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4142388..4142656 | - | 269 | - | - | Antitoxin |
| - | 4142516..4142618 | + | 103 | - | - | Toxin |
| HED12_RS20250 | 4142753..4143409 | + | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| HED12_RS20255 | 4143410..4143601 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HED12_RS20260 | 4143706..4143942 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HED12_RS20265 | 4144060..4145499 | - | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T162586 NZ_CP056077:4142516-4142618 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTTGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTTGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT162586 NZ_CP056077:c4142656-4142388 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCAAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCAAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
