Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2293327..2293598 | Replicon | chromosome |
| Accession | NZ_CP056036 | ||
| Organism | Escherichia coli strain EC31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2293457..2293560 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2293327..2293598 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUW39_RS10850 | 2289882..2290544 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUW39_RS10855 | 2290568..2291224 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUW39_RS10860 | 2291326..2291556 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUW39_RS10865 | 2291695..2292069 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| HUW39_RS10870 | 2292073..2292945 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HUW39_RS10875 | 2292958..2293299 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2293327..2293598 | - | 272 | - | - | Antitoxin |
| - | 2293457..2293560 | + | 104 | - | - | Toxin |
| HUW39_RS10880 | 2293695..2294351 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HUW39_RS10885 | 2294352..2294543 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUW39_RS10890 | 2294648..2294884 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUW39_RS10895 | 2295002..2296441 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2286017..2309437 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162520 NZ_CP056036:2293457-2293560 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT162520 NZ_CP056036:c2293598-2293327 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
